NGS Data Analysis

Transcriptomic (RNA-seq) Data Analysis

• Reference based RNA-Seq analysis
  
  

• De-novo based RNA-Seq analysis
  
  

• Quality control and pre-processing
  
  

• Sequence reads alignment
  
  

• Transcript assembly
  
  

• Transcript quantification
  
  

• Fold change analysis
  
  

• Annotation of differentially expressed genes
  
  

• SNP discovery and characterization
  
  

• Functional analysis
  
  

• Pathway mapping
  
  

• Investigation of protein-protein interactions
  
  

For further enquiries, please contact us

• Singh SK, Reddy SM. Investigation of hub genes and their nonsynonymous single nucleotide polymorphism analysis in Plasmodium falciparum for designing therapeutic methodologies using next-generation sequencing approach. Indian J Pharmacol 2019; 51:389-99.
  
  
• Firoz A, Malik A, Singh SK, Jha V, Ali A. Identification of hub glycogenes and their nsSNP analysis from mouse RNA-Seq data. Gene. 2015; 574:235-46.
  
  
• Firoz A, Malik A, Singh SK, Jha V, Ali A. Comparative Analysis of Glycogene Expression in Different Mouse Tissues Using RNA-Seq Data. Int J Genomics. 2014; 2014:837365.